Computation and visualization of synonymous and nonsynonymous substitution in mitochondrial gene / Vennyl E. Dumajel

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Dumajel, Vennyl E

Material type: Text

TextLanguage: English Publication details: 2005Description: 112 leavesSubject(s):

Undergraduate Thesis CMSC200

Dissertation note: Thesis (BS Computer Science) -- University of the Philippines Mindanao, 2005 Abstract: The developed software entitled ?Computation and Visualization of Synonymous and Nonsynonymous Substitution (CVSNOS)? identifies the type of substitution whether synonymous or nonsynonymous at the amino acid level. It also classifies transition or transversion at the nucleotide level and computes the number of substitutions per position of the codon. Additional feature of this program is that it can generate a visual presentation of the synonymous and nonsynonymous substitutions that occur between the DNA sequences from the set of the species given. The input of this software is the set of names of species and its DNA sequences obtained from the web. Mammalian mitochondrial genetic code was used instead of the universal genetic code since the data input is a mammalian mitochondrial DNA. This software enables molecular biologists to have an accurate result in short span of time and they assured of analyzing the correct set of data

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Cover image	Item type	Current library	Collection	Call number	Status	Date due	Barcode
	Thesis	University Library General Reference	Room-Use Only	LG993.5 2004 C6 D85 (Browse shelf(Opens below))	Not For Loan		3UPML00011323
	Thesis	University Library Archives and Records	Preservation Copy	LG993.5 2005 C6 D85 (Browse shelf(Opens below))	Not For Loan		3UPML00021555

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Thesis (BS Computer Science) -- University of the Philippines Mindanao, 2005

The developed software entitled ?Computation and Visualization of Synonymous and Nonsynonymous Substitution (CVSNOS)? identifies the type of substitution whether synonymous or nonsynonymous at the amino acid level. It also classifies transition or transversion at the nucleotide level and computes the number of substitutions per position of the codon. Additional feature of this program is that it can generate a visual presentation of the synonymous and nonsynonymous substitutions that occur between the DNA sequences from the set of the species given. The input of this software is the set of names of species and its DNA sequences obtained from the web. Mammalian mitochondrial genetic code was used instead of the universal genetic code since the data input is a mammalian mitochondrial DNA. This software enables molecular biologists to have an accurate result in short span of time and they assured of analyzing the correct set of data

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